Software


Formats Discussion of formats for repertoire analysis software.
Topic Replies Activity
About the Software category 2 February 18, 2016
Parapred-Pytorch 1 April 30, 2021
How to incorporate clustering info in AIRR-compliant files 5 January 6, 2021
Adapt Antibody docking server open 1 December 10, 2020
Developing B-Cell Repertoire Analysis Tools 2 August 4, 2020
Experience with Adaptive immunosequencing 1 July 16, 2020
AncesTree: an interactive immunoglobulin lineage tree visualizer 1 July 15, 2020
Fast and painless exploration of single-cell/bulk T-cell and antibody repertoires in R 2 July 14, 2020
Full VDJ reconstruction from lymphoma RNAseq 3 May 12, 2020
Scirpy: A Scanpy extension for analyzing single-cell T-cell receptor sequencing data 1 May 4, 2020
AIRR Software Working Group - Guidelines and Certification for Software Tools 1 January 31, 2020
Immune Repertoire Analysis Survey 2 September 23, 2019
Unknown primer sequences 1 June 3, 2019
Productive status with indels in FW4 3 November 12, 2018
Draft AIRR Software WG standard 13 September 21, 2018
B/Tracer on 10Xgenomics data 2 September 20, 2018
iReceptor v2.0 now available 1 July 23, 2018
Looking for people to test a new web-based submission system for standards-compliant AIRR-seq data to NCBI 1 July 20, 2018
Cell Ranger V(D)J 1 July 3, 2018
List of analysis pipelines 5 February 25, 2018
TCR diversity in non model species 3 January 25, 2018
A Container for Repertoire Sequence Parsers 6 October 6, 2017
Immcantation Docker/Singularity Container 1 October 6, 2017
Can mixcr define IGH type e.g. A M G E D 1 September 26, 2017
Automated reassembly of TCR sequence from VDJ alleles + CDR3? 6 September 13, 2017
How to decide on an example data set to use for testing software? 34 July 6, 2017
Summary statistics for repertoires 8 June 27, 2017
HLA from RNAseq 5 June 15, 2017
Anybody is doing chicken TCR seq? 7 June 12, 2017
Can I use MiXCR on incomplete IgH BCR? 12 May 22, 2017