Software


Formats Discussion of formats for repertoire analysis software.

About the Software category [Software] (2)
Draft AIRR Software WG standard [Software] (12)
Immune Repertoire Analysis Survey [Software] (1)
iReceptor v2.0 now available [Formats] (1)
Looking for people to test a new web-based submission system for standards-compliant AIRR-seq data to NCBI [Software] (1)
Cell Ranger V(D)J [Software] (1)
List of analysis pipelines [Software] (5)
TCR diversity in non model species [Software] (3)
A Container for Repertoire Sequence Parsers [Software] (6)
Immcantation Docker/Singularity Container [Software] (1)
Can mixcr define IGH type e.g. A M G E D [Software] (1)
Automated reassembly of TCR sequence from VDJ alleles + CDR3? [Software] (6)
How to decide on an example data set to use for testing software? ( 2 ) [Software] (34)
Summary statistics for repertoires [Software] (8)
HLA from RNAseq [Software] (5)
Anybody is doing chicken TCR seq? [Software] (7)
Can I use MiXCR on incomplete IgH BCR? [Software] (12)
Vdjdb-splash.png [Formats] (3)
How to use vidjil to expert all the clones [Software] (2)
Any softwares can find out if one CDR3 sequence is mutated from our CDR3 data pool? [Software] (10)
IgPhyML: New model and software for BCR phylogenetics [Software] (1)
MIXCR installation manually [Software] (5)
Defining an API for repertoire sequence analysis tools [Software] (13)
Metadata storage with VDJ rearrangement data [Formats] (10)
Convert between ChangeO and vdjtools formats? [Formats] (8)
Minimal core fields and derived fields for VDJ rearrangement data [Formats] (6)
Representation of alignments in VDJ data [Formats] (5)
Nested vs flat data for VDJ rearrangements ( 2 ) [Formats] (22)
SONAR: A High-Throughput Pipeline for Inferring Antibody Ontogenies from Longitudinal Sequencing of B Cell Transcripts [Software] (1)
Data compression for AIRR format data [Formats] (6)