A Container for Repertoire Sequence Parsers

[ematsen]

Action on a thread relevant to this one:

Defining an API for repertoire sequence analysis tools

This is a recap of a virtual meeting we had this morning. @caschramm, @laserson, @dooley, @javh and I were in attendance. The most important part was @dooley making a strong case for CWL rather than Bioboxes. The essence of this argument was that Bioboxes is great but depends on a particular technology, namely Docker, and that we will be using something else in five years. In contrast, CWL gives a specification grammar that completely abstracts the underlying processing. But, one might respond…