A list of software for finding V, D, and J genes in observed repertoires and annotating junctions between germline genes and insertion regions.
This is a wiki page. Please edit and add software you know about. However, note that this is not the place for closed-source commercial software vendors to advertise their products.
Alignment wrappers and webservers
abstar : Python; focus on scale-up
MiGMAP : wraps IgBLAST and includes extra features
IgValve : Ruby, for validation
vdj : Python; last update 2014