AIRR-seq data in papers


#1
  1. Chen, H. et al. Profiling the pattern of the human T-cell receptor gammadelta complementary determinant region 3 repertoire in patients with lung carcinoma via high-throughput sequencing analysis. Cell Mol. Immunol. 2017.157 (2018).
    [DOI] [PubMed]
    • CDR3 sequences provided in paper
    • Species: Homo Sapiens
    • T cell receptors
    • Illumina MiSeq, mRNA
  2. Chung, Y.L. et al. Spatiotemporal homogeneity and distinctness of the T-cell receptor Beta-chain repertoires in Epstein-Barr virus-associated primary and metastaic nasopharyngeal carcinomas. Int J Cancer 0:0 (2018).
    [DOI] [PubMed]
    • CDR3 sequences provided in paper
    • Species: Homo Sapiens
    • T cell receptors
  3. Fontaine, M. et al. Regulatory T cells constrain the TCR repertoire of antigen-stimulated conventional CD4 T cells. EMBO. J. 37(3):398-412 (2018).
    [DOI] [PubMed]
    • CDR3 sequences provided in paper
    • Species: Mus Musculus
    • T cell receptors
    • Illumina MiSeq, mRNA
  4. Freund, N.T. et al. A new glycan-dependent CD4-binding site neutralizing antibody exerts pressure on HIV-1 in vivo. PLoS Pathog 11(10): e1005238 (2015).
    [DOI] [PubMed]
    • CDR3 sequences provided in paper
    • Species: Homo Sapiens, Mus Musculus
    • T cell receptors
    • Illumina MiSeq, mRNA
  5. Fu, Y. et al. Immunology repertoire study of pulmonary sarcoidosis T cells in CD4+, CD8+ PBMC and tissue. Oncotarget 8(52):89515-89526 (2017).
    [DOI] [PubMed] [PMC]
    • CDR3 sequences provided in paper
    • Species: Homo Sapiens
    • T cell receptors
    • Illumina HiSeq, mRNA
  6. Galson, J.D. et al. In-Depth Assessment of Within-Individual and Inter-Individual Variation in the B Cell Receptor Repertoire. 6:531 (2015).
    [DOI] [PubMed] [PMC]
    • CDR3 sequences provided in paper
    • Species: Homo Sapiens
    • B cell receptors
    • Illumina MiSeq, mRNA
  7. Gerlinger, M. et al. Ultra-deep T cell receptor sequencing reveal the complexity and intratumour heterogeneity of T cell clones in renal cell carcinomas. J. Pathol. 231(4):424-32 (2013).
    [DOI] [PubMed] [PMC]
    • CDR3 sequences provided in paper
    • Species: Homo Sapiens
    • T cell receptors
    • Adaptive Biotechnologies ImmunoSEQ, mRNA
  8. Gros, A. et al. PD-1 identifies the patient-specific CD8+ tumor-reactive repertoire infiltrating human tumors. J. Clin. Invest. 124(5):2246-59 (2014).
    [DOI] [PubMed][PMC]
    • CDR3 sequences provided in paper
    • Species: Homo Sapiens
    • T cell receptors
    • Illumina, mRNA
  9. Hwang, K.K. et al. IGHV1-69 B cell chronic lymphocytic leukemia antibodies cross-react with HIV-1 and hepatitis C virus antigens as well as intestinal commensal bacteria. PLoS One 9(3):e90725 (2014).
    [DOI] [PubMed] [PMC]
    • CDR3 sequences provided in paper
    • Species: Homo sapiens
    • B cell receptors
  10. Kiyotani, K. et al. Characterization of the B-cell receptor repertoires in peanut allergic subjects undergoing oral immunotherapy. Journal of Human Geneticsvolume 63, pp 239–248 (2018).
    [DOI] [PubMed]
    • CDR3 sequences provided in paper
    • Species: Homo Sapiens
    • B cells receptors
    • Illumina MiSeq, mRNA
  11. Maldonado, L. et al. Intramuscular therapeutic vaccination targeting HPV16 induces T cell responses that localize in mucosal lesions. Sci. Transl. Med. 6(221):221ra13 (2014).
    [DOI] [PubMed] [PMC]
    • CDR3 sequences provided in paper
    • Species: Homo Sapiens
    • T cell receptors
  12. Meffre, E. et al. Maturational characteristics of HIV-specific antibodies in viremic individuals. JCI Insight. 1(3): e84610 (2016).
    [DOI] [PubMed] [PMC]
    • CDR3 sequences provided in paper
    • Species: Homo Sapiens
    • B cell receptors
  13. Mouquet, H. et al. Memory B cell antibodies to HIV-1 gp140 cloned from individuals infected with clade A and B viruses. PLoS One 6(9):e24078 (2011).
    [DOI] [PubMed] [PMC]
    • CDR3 sequences provided in paper
    • Species: Homo Sapiens
    • B cell receptors
  14. Munson, D.J. et al. Identification of shared TCR sequences from T cells in human breast cancer using emulson RT-PCR. PNAS 113(29):8272-7 (2016).
    [DOI] [PubMed] [PMC]
    • CDR3 sequences provided in paper
    • Species: Homo Sapiens
    • T cell receptors
    • Illumina, mRNA
  15. Nakanishi, K. Characterization of the T-cell receptor beta chain repertoire in tumor-infiltrating lymphocytes. Cancer Med. 5(9):2513-21 (2016).
    [DOI] [PubMed] [PMC]
    • CDR3 sequences provided in paper
    • Species: Homo Sapiens
    • T cell receptors
    • Ion Torrent, mRNA
  16. Sherwood, A.M. et al. Tumour-infiltrating lymphocytes in colorectal tumors display a diversity of T cell receptor sequences that differ from the T cells in adjacent mucosal tissue. Cancer Immunol. 62(9):1453-61 (2013).
    [DOI] [PubMed] [PMC]
    • CDR3 sequences provided in paper
    • Species: Homo Sapiens
    • T cell receptor
    • Adaptive Biotechnologies, ImmunoSEQ, mRNA
  17. Sui, W. et al. Composition and variating analysis of the TCR B-chain CDR3 repertoire in systemic lupus erythematosus using high-throughput sequencing. 67(2 Pt B):455-64 (2015).
    [DOI] [PubMed]
    • CDR3 sequences provided in paper
    • Species: Homo Sapiens
    • T cell receptors
    • Illumina, mRNA