A list of software that identifies clones from sequence data.
This is a wiki page. Please edit and add software you know about. However, note that this is not the place for closed-source commercial software vendors to advertise their products.
Tools that include antibody lineage analysis:
- BRILIA (Lee et al. 2017) : clonal analysis in parallel with V-D-J annotation
- Change-O (Gupta et al. 2015)
- ClonalRelate (Chen et al. 2010)
- Immunitree (Laserson 2012)
- TRIgS (Lees and Shepherd 2015)
- partis (Ralph and Matsen 2016)
- clonify (Briney et al. 2016)
Error correction and clonotype assembly: