List of V(D)J annotation software


A list of software for finding V, D, and J genes in observed repertoires and annotating junctions between germline genes and insertion regions.

This is a wiki page. Please edit and add software you know about. However, note that this is not the place for closed-source commercial software vendors to advertise their products.

Dedicated aligners

Alignment wrappers and webservers

Without publications

  • abstar : Python; focus on scale-up
  • MiGMAP : wraps IgBLAST and includes extra features
  • IgValve : Ruby, for validation
  • vdj : Python; last update 2014

How best to collect and share germline gene repertoires?
List of B cell clonal identification software
B-T.CR Wiki Home
Germline Set format - The Way Forward