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List of V(D)J annotation software

A list of software for finding V, D, and J genes in observed repertoires and annotating junctions between germline genes and insertion regions.

This is a wiki page. Please edit and add software you know about. However, note that this is not the place for closed-source commercial software vendors to advertise their products.

Dedicated aligners

Alignment wrappers and webservers

Without publications

  • abstar : Python; focus on scale-up
  • MiGMAP : wraps IgBLAST and includes extra features
  • IgValve : Ruby, for validation
  • vdj : Python; last update 2014
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